Jay Tan Lab
Jay Tan Lab
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  • Home
  • Research
  • Publications
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Tan Lab

Tan LabTan LabTan Lab

Studies cellular principles of aging and age-related pathology

Research

Organelle stress and damage are significant risk factors in human aging and various diseases. Our lab aims to elucidate the molecular mechanisms involved in sensing and resolving organelle stress in mammalian cells. We seek to uncover essential, unifying principles behind complex stress responses through unbiased approaches. To dissect the underlying mechanisms, our multidisciplinary methods encompass molecular biology, biochemistry, cell biology, genetics, structural biology, in vitro reconstitution, proteomics, lipidomics, and transcriptomics.

Fundamental questions in lysosomal quality control

We aim to answer several fundamental questions in lysosomal quality control: 


①How is lysosomal function compromised in disease and aging? 

②How do our cells sense lysosomal abnormality? 

③What are the key pathways activated by lysosomal dysfunction? 

④How to restore lysosomal activity for disease treatment? 


In line with our goal to answer these fundamental questions, we are working on several projects to further study the sensing, repairing, and functional restoration of damaged lysosomes. We are also searching for principles dominating lysosomal communication with other organelles as well as the role for lysosomal stress response in inter-cellular communications in aging and organismal pathophysiology.  

Damaged lysosomes are decorated by a lipid kinase

Lysosomal repair in aging and neurodegeneration

Defects in lysosomal function have been increasingly linked to normal aging and age-related diseases. Lysosomal membrane permeabilization (LMP), a hallmark of lysosomal-related diseases, is commonly triggered by diverse cellular stressors. LMP must be rapidly resolved to maintain cellular homeostasis. 


Our recent work uncovered LMP-induced lipid signaling as an essential mechanism for rapid lysosomal repair (Nature, 2022). Upon lysosomal membrane damage, a new phosphoinositide messenger is rapidly produced on lysosomes, which in turn drives the formation of extensive, new membrane contacts between damaged lysosomes and the endoplasmic reticulum (ER). These new inter-organelle interactions directly mediate rapid lysosomal repair, with important implications for a wide range of lysosomal-related diseases. We are further investigating the role of this pathway in aging. 


Tau fibril spreading is a major factor contributing to the progression of Alzheimer’s disease (AD). Lysosomal membrane damage by internalized tau fibrils is a key step in tau spreading, suggesting that efficient rapid lysosomal membrane repair would suppress tau spreading and AD progression. Our prelim work shows that defects in rapid lysosomal repair markedly increased tau fibril spreading in cell-based assays. We are further characterizing how lysosomal quality control antagonizes tau spreading in vitro and in vivo and explore pharmacological strategies to activate this pathway for the therapeutic purpose of AD.  

Extensive ER (green)/lysosome (red) contacts

Inter-organelle communications in aging

We are interested in essential inter-organelle communications that maintain cellular homeostasis. Our recent work revealed striking ER-lysosomal interactions upon lysosomal stress. Factors recruited to these membrane contact sites include not only the rapid lysosomal repair machineries but also additional proteins with distinct functions. We are continuing investigating how these factors might contribute to lysosomal quality control in aging and whether these inter-organelle events are triggered in aging or age-related diseases. 


We are also interested in membrane contacts initiated from other organelles such as lipid droplets, peroxisomes, and mitochondria. We are developing new approaches to discover stress-induced inter-organelle communications. 


Dynamic contacts between lysosomes and innate immune signaling complexes

Lysosomes in senescence, innate immunity and age-related inflammation

Most well-known as degradative compartments, lysosomes are multifunctional centers also involved in metabolism, nutrient sensing, and immunity.  Dysfunctional lysosomes are implicated in senescence and autoimmune disorders. We are using high throughput screens to search for the molecular basis of lysosomal dysfunction-induced senescence and inflammation.  We are also trying to understand communications between lysosomal stress and innate immune pathways. 

PUblications

Tan, J.X. Harnessing lysohormesis for healthy ageing. Nature Cell Biology, 2025. March 24: 1-4.


Lv B, Dion WA, Yang H, Xun J, Kim DH, Zhu B, Tan JX. A TBK1-independent primordial function of STING in lysosomal biogenesis. Molecular Cell. 2024 Sep 19. 

          Highlight: TFEB links the cGAS-STING pathway to lysosome biogenesis


Bo Lv, Jinrui Xun, Jay Xiaojun Tan. STING-dependent ATG8ylation. 2024. Book Title: Atg8ylation And Its Manifestations, Edited By Vojo Deretic. ISBN:978-1-0364-0892-3. Cambridge Scholars Publishing


Jinrui Xun, Zhichao Zhang, Bo Lv, Defen Lu, Haoxiang Yang, Guijun Shang, Jay Xiaojun Tan. A conserved ion channel function of STING mediates noncanonical autophagy and cell death. EMBO Reports. published online. Jan 2, 2024. 

          Highlight: STINGing organelle surface with acid


Tan JX*, Finkel T. Lysosomes in senescence and aging. EMBO Reports. 2023:e57265. *Correspondence. 


Yang H, Tan JX. Lysosomal quality control: molecular mechanisms and therapeutic implications. 

Trends in Cell Biology. 2023.  DOI:https://doi.org/10.1016/j.tcb.2023.01.001 


Tan, JX, Finkel, T. A phosphoinositide signalling pathway mediates rapid lysosomal repair. Nature. (2022). https://doi.org/10.1038/s41586-022-05164-4 

           Highlights:   

                   A quick fix for lysosomes. Nat Struct Mol Biol 29, 955 (2022). 

                   Phosphoinositide signal for lysosomal membrane repair. Nat Rev Mol Cell Biol 23, 697 (2022).

                   PITTching in for lysosome repair. Dev Cell. 2022

                   The PITT pathway: Keeping lysosomes young. Clin Transl Med  12(10): e1097 (2022).


Tan X, Anderson RA. Keeping in touch with the ER network. Science.  2017;12;356(6338): 584-585. 


Tan X, Thapa N, Sun Y, Anderson RA. A kinase independent role for EGF   receptor in autophagy initiation. Cell. 2015;160(1-2):145-60. 


Tan X, Thapa N, Liao Y, Choi S, Anderson RA. PtdIns(4,5)P2  signaling regulates ATG14 and autophagy. PNAS. 2016;113(39):10896-901. doi: 10.1073/pnas.1523145113.


Tan X, Sun Y, Thapa N, Liao Y, Hedman AC, Anderson RA. LAPTM4B is a PtdIns(4,5)P2 effector that   regulates EGFR signaling, lysosomal sorting, and degradation. EMBO   J. 2015; 34(4):475-90. 


Tan JX, Finkel T. Autophagy goes nuclear. Nature Cell Biology. 2020;22(10):1159-61. 


 Tan JX, Finkel T. Mitochondria as intracellular signaling platforms in health and disease. Journal of Cell Biology.  2020;219(5): e202002179. 


Tan X, Sun L, Chen J, Chen ZJ. Detection of microbial infections through innate immune sensing of nucleic acids. Annual Review of Microbiology. 2018;72:447-78. 


Tan X, Lambert PF, Rapraeger AC, Anderson RA. Stress-induced EGFR trafficking:   mechanisms, functions, and therapeutic implications. Trends Cell Biol. 2016;26(5):352-66.   


Gui   X, Yang H, Li T, Tan X, Shi P, Du   F, Chen ZJ. Autophagy Induction via STING Trafficking Is a   Primordial Function of the cGAS Pathway. Nature. 2019;567(7747):262-266. 


Complete List of Published Work: Pubmed          Google Scholar


Complete List of Published Work: Pubmed    Google Scholar

team

  • We are committed to building a welcoming and respectful research environment that encourages all lab members to succeed. 
  • We value integrity, honesty, and persistence, regardless of gender, nationality, culture, or identity. 
  • We value open communication and respect different opinions. 
  • We help each other by sharing knowledge, ideas, information, resources, and reagents. 
  • We value efficiency but conserve laboratory supplies. We recycle whenever possible for the sustainability of our planet.
  • We share responsibility in laboratory cleaning and maintenance. 
  • We teach each other in the lab and make progress together in our research and career. 

Awishi Mondal

Anna S. Apetrei-Pandrea

Anna S. Apetrei-Pandrea

Ph.D. student

Anna S. Apetrei-Pandrea

Anna S. Apetrei-Pandrea

Anna S. Apetrei-Pandrea

2024 Hillman Academy Scholar

Bo Lyu, PhD

Anna S. Apetrei-Pandrea

Bo Lyu, PhD

 Postdoctoral Researcher 

Anuj Peri

Jinrui (Jeffrey) Xun

Bo Lyu, PhD

 Undergraduate Researcher 

Jinrui (Jeffrey) Xun

Jinrui (Jeffrey) Xun

Jinrui (Jeffrey) Xun

MD student; Xiangya Scholar

Xiaojie Yu, PhD

Jinrui (Jeffrey) Xun

Jinrui (Jeffrey) Xun

 Postdoctoral Researcher 

Rae Yang

Jenny Cheng

Zhenjie Yi

 Undergraduate Researcher 

Zhenjie Yi

Jenny Cheng

Zhenjie Yi

MD student; Xiangya Scholar

Jenny Cheng

Jenny Cheng

Fangling Tian, PhD

 Undergraduate Researcher 

Fangling Tian, PhD

Jay Xiaojun Tan, PhD

Fangling Tian, PhD

 Postdoctoral Researcher 

Michael Ewing, MS

Jay Xiaojun Tan, PhD

Jay Xiaojun Tan, PhD

Research Scientist


Jay Xiaojun Tan, PhD

Jay Xiaojun Tan, PhD

Jay Xiaojun Tan, PhD

 Principle Investigator

Assistant Professor of Cell Biology 

LAB NEWS

09/17/2024

 The first transcription program downstream of the primordial STING channel is published in Molecular Cell. Congratulations to Bo & coauthors!

01/02/2024

The peer-reviewed version of the "STING channel" work is online today at EMBO Reports. Congratulations to Jeff and Bo! 

09/01/2023

09/01/2023

The Tan lab received a MIRA R35 award from NIGMS. Great news for the lab! 

08/27/2023

09/01/2023

We bioRxiv'ed a manuscript - A conserved ion channel function of STING in non-canonical autophagy and cell death. Congratulations to all the co-authors! 

01/13/2023

01/13/2023

Our first review article is accepted by Trends in Cell Biology. Congratulations! 

09/07/2022

01/13/2023

Our recent work on lysosomal repair is published online today at Nature. Congratulations! 

UPMC news:  PITT Pathway: Pitt Scientists Discover How Cells Repair Longevity-Promoting ‘Recycling System’ (upmc.com) 

Genetic Engineering & Biotechnology News:   Longevity Depends on Prompt Repair of Lysosomal Breaches (genengnews.com) 

学术经纬:今日《自然》:两位科学家首次揭示溶酶体修复的核心机制 

BioArt: Nature | 溶酶体损伤修复的核心机制 




Find out more

JOIN

We are seeking talented and passionate scientists from all stages to join our team. We support all team members to succeed in both research and career. Training and mentoring are important aspects integrated into all team members' career development plans. 


If you are interested in joining us, please email jay.tan at pitt.edu a cover letter (summarizing your previous training, research interests, and career goals), CV, and contact information for three references.

Postdoctoral Researchers

We are searching for a highly motivated postdoctoral fellow to join us in studying lysosomal stress in innate immunity and age-related inflammation. Excellent training opportunities will be provided in both research and career development as well as in exploring new directions with established screening approaches in the lab. The candidate is expected to seek independent positions in academia when moving forward from this position. 

Graduate Students & Research Technicians

 We are recruiting graduate students and research technicians with 0-3 years of research experience to join us in studying lysosomal quality control in aging and Alzheimer's disease. We have established a robust research program on these topics and will provide extensive training in cell biology, molecular biology, biochemistry, advanced biochemistry, genetics, and mouse models. 


Research technicians should have a bachelor's degree and are expected to apply for Ph.D. or M.D. programs when moving forward from the lab. 

Tsinghua & Xiangya Scholars

 We have open positions for Tsinghua and Xiangya Scholars in studying cellular quality control mechanisms in aging, immunity, and disease. We have multiple active research projects on these topics and will provide top-quality training in cell biology, molecular biology, biochemistry, advanced biochemistry, genetics, and mouse models. 

 

Undergraduate researchers

Multiple undergraduate research positions are available for our exciting, ongoing projects. Undergraduate researchers are expected to apply for Ph.D. or M.D. programs when moving forward to the next stage of their careers.

CONTACT

Jay Tan, PhD

Assistant Professor

Aging Institute

Department of Cell Biology

University of Pittsburgh School of Medicine/UPMC

Bridgeside Point I, Suite 564

100 Technology Dr.

Pittsburgh, PA 15219

Phone: 412-624-2291

Fax: 412-383-9055 

Email: Jay.Tan at Pitt.edu

Lab location

100 Technology Drive, Room 457, Pittsburgh, Pennsylvania 15219, United States

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